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CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.
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CleverCSV provides a drop-in replacement for the Python csv package
with improved dialect detection for messy CSV files. It also provides a handy
command line tool that can standardize a messy file or generate Python code to
import it.
Useful links:
Contents: Quick Start | Introduction | Installation | Usage | Python Library | Command-Line Tool | Version Control Integration | Contributing | Notes
Click here to go to the introduction with more details about CleverCSV. If you're in a hurry, below is a quick overview of how to get started with the CleverCSV Python package and the command line interface.
For the Python package:
# Import the package
>>> import clevercsv
# Load the file as a list of rows
# This uses the imdb.csv file in the examples directory
>>> rows = clevercsv.read_table('./imdb.csv')
# Load the file as a Pandas Dataframe
# Note that df = pd.read_csv('./imdb.csv') would fail here
>>> df = clevercsv.read_dataframe('./imdb.csv')
# Use CleverCSV as drop-in replacement for the Python CSV module
# This follows the Sniffer example: https://docs.python.org/3/library/csv.html#csv.Sniffer
# Note that csv.Sniffer would fail here
>>> with open('./imdb.csv', newline='') as csvfile:
... dialect = clevercsv.Sniffer().sniff(csvfile.read())
... csvfile.seek(0)
... reader = clevercsv.reader(csvfile, dialect)
... rows = list(reader)
And for the command line interface:
# Install the full version of CleverCSV (this includes the command line interface)
$ pip install clevercsv[full]
# Detect the dialect
$ clevercsv detect ./imdb.csv
Detected: SimpleDialect(',', '', '\\')
# Generate code to import the file
$ clevercsv code ./imdb.csv
import clevercsv
with open("./imdb.csv", "r", newline="", encoding="utf-8") as fp:
reader = clevercsv.reader(fp, delimiter=",", quotechar="", escapechar="\\")
rows = list(reader)
# Explore the CSV file as a Pandas dataframe
$ clevercsv explore -p imdb.csv
Dropping you into an interactive shell.
CleverCSV has loaded the data into the variable: df
>>> df
CleverCSV is a Python package that aims to solve some of the pain points of CSV files, while maintaining many of the good things. The package automatically detects (with high accuracy) the format (dialect) of CSV files, thus making it easier to simply point to a CSV file and load it, without the need for human inspection. In the future, we hope to solve some of the other issues of CSV files too.
CleverCSV is based on science. We investigated thousands of real-world CSV files to find a robust way to automatically detect the dialect of a file. This may seem like an easy problem, but to a computer a CSV file is simply a long string, and every dialect will give you some table. In CleverCSV we use a technique based on the patterns of row lengths of the parsed file and the data type of the resulting cells. With our method we achieve 97% accuracy for dialect detection, with a 21% improvement on non-standard (messy) CSV files compared to the Python standard library.
We think this kind of work can be very valuable for working data scientists and programmers and we hope that you find CleverCSV useful (if there's a problem, please open an issue!) Since the academic world counts citations, please cite CleverCSV if you use the package. Here's a BibTeX entry you can use:
@article{van2019wrangling,
title = {Wrangling Messy {CSV} Files by Detecting Row and Type Patterns},
author = {{van den Burg}, G. J. J. and Naz{\'a}bal, A. and Sutton, C.},
journal = {Data Mining and Knowledge Discovery},
year = {2019},
volume = {33},
number = {6},
pages = {1799--1820},
issn = {1573-756X},
doi = {10.1007/s10618-019-00646-y},
}
And of course, if you like the package please spread the word! You can do this by Tweeting about it (#CleverCSV) or clicking the ⭐️ on GitHub!
CleverCSV is available on PyPI. You can install either the full version, which includes the command line interface and all optional dependencies, using
$ pip install clevercsv[full]
or you can install a lighter, core version of CleverCSV with
$ pip install clevercsv
CleverCSV consists of a Python library and a command line tool called
clevercsv.
We designed CleverCSV to provide a drop-in replacement for the built-in CSV module, with some useful functionality added to it. Therefore, if you simply want to replace the builtin CSV module with CleverCSV, you can import CleverCSV as follows, and use it as you would use the builtin csv module.
import clevercsv
CleverCSV provides an improved version of the dialect sniffer in the CSV module, but it also adds some useful wrapper functions. These functions automatically detect the dialect and aim to make working with CSV files easier. We currently have the following helper functions:
Of course, you can also use the traditional way of loading a CSV file, as in the Python CSV module:
import clevercsv
with open("data.csv", "r", newline="") as fp:
# you can use verbose=True to see what CleverCSV does
dialect = clevercsv.Sniffer().sniff(fp.read(), verbose=False)
fp.seek(0)
reader = clevercsv.reader(fp, dialect)
rows = list(reader)
Since CleverCSV v0.8.0, dialect detection is a lot faster than in previous versions. However, for large files, you can speed up detection even more by supplying a sample of the document to the sniffer instead of the whole file, for example:
dialect = clevercsv.Sniffer().sniff(fp.read(10000))
You can also speed up encoding detection by installing cCharDet, it will automatically be used when it is available on the system.
That's the basics! If you want more details, you can look at the code of the package, the test suite, or the API documentation. If you run into any issues or have comments or suggestions, please open an issue on GitHub.
To use the command line tool, make sure that you install the full version of CleverCSV (see above).
The clevercsv command line application has a number of handy features to
make working with CSV files easier. For instance, it can be used to view a CSV
file on the command line while automatically detecting the dialect. It can
also generate Python code for importing data from a file with the correct
dialect. The full help text is as follows:
usage: clevercsv [-h] [-V] [-v] command ...
Available commands:
help Display help information
detect Detect the dialect of a CSV file
view View the CSV file on the command line using TabView
standardize Convert a CSV file to one that conforms to RFC-4180
code Generate Python code to import a CSV file
explore